Bioinformatics

Assembly genomes with Bowtie2
How to assembly multiple fastq files with Bowtie2 and how to count reads with Rsubread
Assembly genomes with Bowtie2
Differential gene expression with DESeq2
How to perform a differential gene expression analyis with DESeq2
Differential gene expression with DESeq2
Retrieve information from Uniprot with Uniprot.ws
How to download information from Uniprot database
Retrieve information from Uniprot with Uniprot.ws
Differential gene expression with edgeR
How to perform a differential gene expression analyis with edgeR
Differential gene expression with edgeR
Pairwise alignments.
How to make pairwise alingments with Biostrings package.
Pairwise alignments.
Accessing and downloading from entrez database system
How to get data from entrez with rentrez package.
Accessing and downloading from entrez database system
Basic operations with biological sequences.
In this lecture we are going to learn how to import and export .fasta files, alignments and other basic operations.
Basic operations with biological sequences.
R tidyverse: stringr Part two (regular expressions)
This time working biological sequences, regular expressions and with purrr package too.
R tidyverse: stringr Part two (regular expressions)
Downloading information from NCBI databases
How to obtain relevant information with RISmed package.
Downloading information from NCBI databases
Multiple sequence alignments
How to make multiple sequence alingments with msa package
Multiple sequence alignments