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R
Pairwise alignments.
How to make pairwise alingments with Biostrings package.
Accessing and downloading from entrez database system
How to get data from entrez with rentrez package.
Graphics with R ggplot2
Some basic examples about how to make plots with ggplot
Integrating google sheets with R
Some basic examples about how to make plots with ggplot
Basic operations with biological sequences.
In this lecture we are going to learn how to import and export .fasta files, alignments and other basic operations.
R tidyverse: dplyr.
Brief introduction on the use of dplyr for data analysis.
R tidyverse: readr
Import .csv files, Excel files and basic parsing.
R tidyverse: stringr Part one (Basics)
A package to deal easily with strings.
R tidyverse: stringr Part two (regular expressions)
This time working biological sequences, regular expressions and with purrr package too.
R tidyverse: tidyr.
Use tidyr to order your data in a suitable format.
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